PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538954.1_FGP008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 398aa    MW: 42759.1 Da    PI: 8.4199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538954.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-121591981155
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        rRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  KN538954.1_FGP008 159 RRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 198
                        8******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.107148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16151206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-13152202No hitNo description
SMARTSM003531.0E-13155203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9159198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAKLELSCGK KKKEKSLVMR TATNCSRSDG NDFAELLWEN GQAVVHGRKK HPQPAFPPFG  60
FFGGTGGGGG GSSSRAQERQ PGGIDAFAKA RKAPEATVAT SSVCSGNGAG SDELWRQQKR  120
KCQAQAECSA SQDDDLDDEP GVLRKSGTRS TKRSRTAERR RDRINEKMRA LQELIPNCNK  180
IDKASMLDEA IEYLKTLQLQ VQMMSMGTGL CIPPMLLPTA MQHLQIPPMA HFPHLGMGLG  240
YGMGVFDMSN TGALQMPPMP GAHFPCPMIP GASPQGLGIP GTSTMPMFGV PGQTIPSSAY  300
SVPPFASLAG LPVRPSGVPQ VSGAMANMVQ DQQQGIANQQ QQCLNKEAIQ GANPGDSQMQ  360
IIMQNVPVLK RSMAEEFHMV EDATRLQAVI LDFQCSFL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022520.0AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619034.11e-176PREDICTED: transcription factor APG-like isoform X2
TrEMBLA0A0E0MUV10.0A0A0E0MUV1_ORYRU; Uncharacterized protein
STRINGBGIOSGA001870-PA1e-174(Oryza sativa Indica Group)
STRINGLOC_Os01g18290.11e-175(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-28phytochrome interacting factor 3